STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMU05320Putative LPS biosynthesis-related glycosyltransferase; evidence=ISS; db_xref=bfragilisNCTC9343:BF3815; date=20070321; method=automatic:reciprocal fasta. (321 aa)    
Predicted Functional Partners:
HMU06560
Putative glycosyltransferase; evidence=ISS.
 
     0.657
HMU05310
Putative LPS biosynthesis-related glycosyl transferase (pseudogene); HMMPfam hit to PF00535, Glycos_transf_2, score 6.8e-32.
  
    0.574
galE
UDP-glucose 4-epimerase; evidence=ISS; db_xref=cjejuni:Cj1131c; date=20070321; method=automatic:reciprocal fasta; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
  
 0.572
manC
Putative GDP-mannose pyrophosphorylase; evidence=ISS; db_xref=bcenocepacia:CAL3246; date=20070321; method=automatic:reciprocal fasta; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.434
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.