STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMU06390Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj1640; date=20070321; method=automatic:reciprocal fasta. (199 aa)    
Predicted Functional Partners:
murE
UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-dia mi ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
       0.813
HMU06380
nifU protein homolog; evidence=ISS; db_xref=cjejuni:Cj1639; date=20070321; method=automatic:reciprocal fasta.
       0.799
maf
MAF homolog; evidence=ISS; db_xref=cjejuni:Cj0507; date=20070321; method=automatic:reciprocal fasta; Belongs to the Maf family.
       0.493
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.493
HMU06340
Putative thioredoxin reductase, TrxB; evidence=ISS; db_xref=cjejuni:Cj0559; date=20070321; method=automatic:reciprocal fasta.
       0.462
HMU06350
Putative Cation transport subunit for cbb3-type oxidase; evidence=ISS; db_xref=cjejuni:Cj1154c; date=20070321; method=automatic:reciprocal fasta.
       0.462
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.