STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMU06910ABC transporter, permease protein; evidence=ISS; db_xref=smarcescens:SMA2577; date=20070321; method=automatic:reciprocal fasta. (343 aa)    
Predicted Functional Partners:
HMU06920
ABC transporter, ATP-binding protein; evidence=ISS; db_xref=bavium:BAV2612; date=20070321; method=automatic:reciprocal fasta.
     0.946
HMU09800
Putative ABC transporter integral membrane subunit; evidence=ISS; db_xref=yenterocolitica:YE1429; date=20070321; method=automatic:reciprocal fasta.
  
 0.909
HMU09810
Putative ABC transport system, substrate-binding protein; evidence=ISS; db_xref=bpseudomallei:BPSL2203; date=20070321; method=automatic:reciprocal fasta.
 
  
 0.837
HMU06930
Putative hypothetical protein; evidence=ISS.
       0.773
rpmA
50S ribosomal protein L27; evidence=ISS; db_xref=cjejuni:Cj0095; date=20070321; method=automatic:reciprocal fasta; Belongs to the bacterial ribosomal protein bL27 family.
       0.631
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
       0.618
yabJ
Putative regulatory protein Endoribonuclease L-PSP; evidence=ISS; db_xref=saureusMSSA476:SAS0454; date=20070321; method=automatic:reciprocal fasta.
       0.457
rsmI
Putative methylase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.413
HMU06950
Putative rRNA methylase; evidence=ISS; db_xref=cjejuni:Cj0153c; date=20070321; method=automatic:reciprocal fasta; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.410
HMU06960
Putative hypothetical protein; evidence=ISS.
       0.410
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.