STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ciaBCiaB protein; evidence=ISS; db_xref=cjejuni:Cj0914c; date=20070321; method=automatic:reciprocal fasta; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (769 aa)    
Predicted Functional Partners:
HMU07010
Putative periplasmic protein; evidence=ISS.
       0.773
HMU13050
Putative transmembrane protein; evidence=ISS; db_xref=cjejuni:Cj0268c; date=20070321; method=automatic:reciprocal fasta.
  
    0.586
HMU06990
Putative metallophosphoesterase; evidence=ISS; db_xref=cjejuni:Cj0846; date=20070321; method=automatic:reciprocal fasta.
       0.544
HMU06980
Putative transmembrane transport protein; evidence=ISS; db_xref=cjejuni:Cj1369; date=20070321; method=automatic:reciprocal fasta.
       0.527
trxA
Thioredoxin; evidence=ISS; db_xref=cjejuni:Cj0147c; date=20070321; method=automatic:reciprocal fasta; Belongs to the thioredoxin family.
  
 
 0.517
HMU14090
Putative thioredoxin, TrxA; evidence=IEA; db_xref=cjejuni:Cj0147c; date=20070321; method=automatic:top fasta hit; Belongs to the thioredoxin family.
  
 
 0.517
kpsF
KpsF protein; evidence=ISS; db_xref=cjejuni:Cj1443c; date=20070321; method=automatic:reciprocal fasta; phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. The group includes GutQ, a protein of the glucitol operon and KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of Escherichia coli; Belongs to the SIS family. GutQ/KpsF subfamily.
     
 0.463
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 
 0.460
engB
Probable GTP-binding protein Engb; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
  
    0.450
HMU07020
Putative ATP/GTP-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.413
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.