STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arsCPutative arsenate reductase, ArsC; evidence=ISS; db_xref=nmeningitidis_serogroupC_strainFAM18:NMC1139; date=20070321; method=automatic:reciprocal fasta; Belongs to the ArsC family. (113 aa)    
Predicted Functional Partners:
rpoC
Putative DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.894
HMU07180
Putative lipoprotein; evidence=ISS; db_xref=cjejuni:Cj0946; date=20070321; method=automatic:top fasta hit.
  
    0.814
HMU07190
Periplasmic solute binding protein for ABC transport system; evidence=ISS; db_xref=cjejuni:Cj0143c; date=20070321; method=automatic:reciprocal fasta.
       0.813
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.769
rpoD
RNA polymerase sigma factor (sigma-70); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
    
   0.764
HMU07200
Putative ABC transporter ATP-binding protein; evidence=ISS; db_xref=cjejuni:Cj0142c; date=20070321; method=automatic:top fasta hit.
       0.747
HMU07210
Putative Malate:quinone oxidoreductase; evidence=ISS; db_xref=cjejuni:Cj0393c; date=20070321; method=automatic:reciprocal fasta.
       0.747
HMU07220
ABC transporter integral membrane protein; evidence=ISS; db_xref=cjejuni:Cj0141c; date=20070321; method=automatic:reciprocal fasta.
       0.747
HMU07230
Putative periplasmic protein; evidence=ISS.
       0.693
HMU07160
Putative hypothetical protein; Homologous to H. pylori HP0114 gene product involved in flagellar glycosylation.
       0.658
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.