STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMU07200Putative ABC transporter ATP-binding protein; evidence=ISS; db_xref=cjejuni:Cj0142c; date=20070321; method=automatic:top fasta hit. (321 aa)    
Predicted Functional Partners:
HMU07220
ABC transporter integral membrane protein; evidence=ISS; db_xref=cjejuni:Cj0141c; date=20070321; method=automatic:reciprocal fasta.
 
 0.999
HMU07190
Periplasmic solute binding protein for ABC transport system; evidence=ISS; db_xref=cjejuni:Cj0143c; date=20070321; method=automatic:reciprocal fasta.
 
 
 0.998
HMU07210
Putative Malate:quinone oxidoreductase; evidence=ISS; db_xref=cjejuni:Cj0393c; date=20070321; method=automatic:reciprocal fasta.
       0.814
HMU07230
Putative periplasmic protein; evidence=ISS.
       0.773
arsC
Putative arsenate reductase, ArsC; evidence=ISS; db_xref=nmeningitidis_serogroupC_strainFAM18:NMC1139; date=20070321; method=automatic:reciprocal fasta; Belongs to the ArsC family.
     
 0.767
HMU07180
Putative lipoprotein; evidence=ISS; db_xref=cjejuni:Cj0946; date=20070321; method=automatic:top fasta hit.
       0.749
HMU07240
Putative hypothetical protein; evidence=ISS.
       0.689
HMU07160
Putative hypothetical protein; Homologous to H. pylori HP0114 gene product involved in flagellar glycosylation.
       0.592
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
   
 0.409
HMU07130
Putative radical SAM domain protein; evidence=ISS; db_xref=cjejuni:Cj1244; date=20070321; method=automatic:reciprocal fasta.
 
     0.406
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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