STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMU07210Putative Malate:quinone oxidoreductase; evidence=ISS; db_xref=cjejuni:Cj0393c; date=20070321; method=automatic:reciprocal fasta. (449 aa)    
Predicted Functional Partners:
gltA
Citrate synthase; evidence=ISS; db_xref=cjejuni:Cj1682c; date=20070321; method=automatic:reciprocal fasta; Belongs to the citrate synthase family.
  
  
 0.944
ppc
Putative phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
     
 0.930
fumA
Fumarate hydratase, subunit B; evidence=ISS; db_xref=cbotulinum:CBO3441; date=20070321; method=automatic:reciprocal fasta.
     
 0.909
fumA-2
Fumarate hydratase, subunit A; evidence=ISS; db_xref=cbotulinum:CBO3442; date=20070321; method=automatic:reciprocal fasta.
     
 0.909
HMU07200
Putative ABC transporter ATP-binding protein; evidence=ISS; db_xref=cjejuni:Cj0142c; date=20070321; method=automatic:top fasta hit.
       0.814
HMU07220
ABC transporter integral membrane protein; evidence=ISS; db_xref=cjejuni:Cj0141c; date=20070321; method=automatic:reciprocal fasta.
       0.814
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
    
  0.809
argH
Argininosuccinate lyase; evidence=ISS; db_xref=cjejuni:Cj0931c; date=20070321; method=automatic:reciprocal fasta.
    
  0.808
aspB
Aspartate aminotransferase; evidence=ISS; db_xref=cjejuni:Cj0762c; date=20070321; method=automatic:reciprocal fasta.
     
 0.803
gdh
NADP-specific glutamate dehydrogenase; evidence=ISS; db_xref=suberis:SUB0762; date=20070321; method=automatic:reciprocal fasta; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.802
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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