STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerDDNA recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Belongs to the 'phage' integrase family. XerH subfamily. (354 aa)    
Predicted Functional Partners:
HMU07260
Putative phospho-2-dehydro-3-deoxyheptonate aldolase; evidence=ISS; db_xref=cjejuni:Cj0716; date=20070321; method=automatic:reciprocal fasta.
       0.773
HMU02790
Possible purine/pyrimidine phosphoribosyltransferase; evidence=ISS; db_xref=cjejuni:Cj1028c; date=20070321; method=automatic:reciprocal fasta.
   
    0.752
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.732
HMU04290
parB family protein; evidence=ISS; db_xref=cjejuni:Cj0101; date=20070321; method=automatic:reciprocal fasta; Belongs to the ParB family.
  
  
 0.631
ftsK
Putative cell division protein; evidence=ISS; db_xref=cjejuni:Cj0886c; date=20070321; method=automatic:reciprocal fasta; Belongs to the FtsK/SpoIIIE/SftA family.
  
   
 0.625
tyrA
Putative prephenate dehydrogenase; evidence=ISS; db_xref=cjejuni:Cj0130; date=20070321; method=automatic:reciprocal fasta.
  
    0.623
rpsU
30S ribosomal protein S21; evidence=ISS; db_xref=cjejuni:Cj0370; date=20070321; method=automatic:reciprocal fasta; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.605
HMU12120
Putative cell-division protein; evidence=ISS; db_xref=nmeningitidis_serogroupC_strainFAM18:NMC1031; date=20070321; method=automatic:top fasta hit.
  
   
 0.596
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
  
 0.579
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
    
 
 0.538
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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