STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HMU07340Putative membrane protein; evidence=ISS; db_xref=smarcescens:SMA3219; date=20070321; method=automatic:reciprocal fasta. (246 aa)    
Predicted Functional Partners:
HMU03710
Putative integral membrane protein; evidence=ISS; db_xref=cjejuni:Cj0183; date=20070321; method=automatic:reciprocal fasta.
      0.859
corA
Magnesium and cobalt transport protein; Mediates influx of magnesium ions. Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.
       0.814
pgk
Phosphoglycerate kinase; evidence=ISS; db_xref=cjejuni:Cj1402c; date=20070321; method=automatic:reciprocal fasta; Belongs to the phosphoglycerate kinase family.
       0.799
HMU07330
Putative hypothetical protein; evidence=ISS.
       0.651
gapA
Glyceraldehyde 3-phosphate dehydrogenase; evidence=ISS; db_xref=cjejuni:Cj1403c; date=20070321; method=automatic:reciprocal fasta; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
       0.448
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
  
    0.419
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.