STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmF50S ribosomal protein L32; evidence=ISS; db_xref=cjejuni:Cj0330c; date=20070321; method=automatic:reciprocal fasta; Belongs to the bacterial ribosomal protein bL32 family. (50 aa)    
Predicted Functional Partners:
rpmC
50S ribosomal protein L29; evidence=ISS; Belongs to the universal ribosomal protein uL29 family.
  
 
 0.993
rpsP
30S ribosomal protein S16; evidence=ISS; db_xref=cjejuni:Cj0710; date=20070321; method=automatic:reciprocal fasta; Belongs to the bacterial ribosomal protein bS16 family.
  
 
 0.987
rplL
50S ribosomal protein L7 /L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
  
 
 0.985
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
 
 0.985
rpmB
50S ribosomal protein L28; evidence=ISS; db_xref=cjejuni:Cj0450c; date=20070321; method=automatic:reciprocal fasta; Belongs to the bacterial ribosomal protein bL28 family.
  
 
 0.985
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.985
rplQ
50S ribosomal protein L17; evidence=ISS; db_xref=cjejuni:Cj1596; date=20070321; method=automatic:reciprocal fasta.
  
 
 0.985
rplW
50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
  
 
 0.985
rpsF
Putative 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
 
 0.985
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.
   
 
 0.984
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.