STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMU07450Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj1251; date=20070321; method=automatic:reciprocal fasta. (153 aa)    
Predicted Functional Partners:
purD
Phosphoribosylamine--glycine ligase; evidence=ISS; db_xref=cjejuni:Cj1250; date=20070321; method=automatic:reciprocal fasta; Belongs to the GARS family.
       0.814
lptD
Putative organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
       0.814
atpH
ATP synthase F1 sector delta subunit; evidence=ISS; db_xref=cjejuni:Cj0104; date=20070321; method=automatic:reciprocal fasta.
  
     0.761
petC
Putative ubiquinol-cytochrome C reductase cytochrome C subunit; evidence=ISS; db_xref=cjejuni:Cj1184c; date=20070321; method=automatic:reciprocal fasta.
  
     0.743
HMU00400
Putative purine nucleoside phosphorylase; evidence=ISS; db_xref=cjejuni:Cj1712; date=20070321; method=automatic:reciprocal fasta.
  
     0.732
HMU09460
Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj0957c; date=20070321; method=automatic:reciprocal fasta.
  
   0.715
HMU10220
Putative hypothetical protein; evidence=ISS.
  
     0.709
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
    0.706
atpF-2
ATP synthase F0 sector B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.689
mreC
Putative rod shape determining protein MreC; evidence=ISS; db_xref=cjejuni:Cj0277; date=20070321; method=automatic:reciprocal fasta.
 
     0.672
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.