STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptDPutative organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family. (759 aa)    
Predicted Functional Partners:
purD
Phosphoribosylamine--glycine ligase; evidence=ISS; db_xref=cjejuni:Cj1250; date=20070321; method=automatic:reciprocal fasta; Belongs to the GARS family.
       0.814
HMU07450
Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj1251; date=20070321; method=automatic:reciprocal fasta.
       0.814
HMU11510
Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj0649; date=20070321; method=automatic:reciprocal fasta.
 
 
 0.801
HMU02870
Putative bacterial surface antigen; evidence=ISS; db_xref=cjejuni:Cj0129c; date=20070321; method=automatic:reciprocal fasta; KH; Only one homologue on mustalae genome. Identified with E. coli YaeT (Omp85). In BlastP on Pubmed, it identifies a surface antigen and in some cases this is labelled as being part of the Omp85 family e.g for Burkholderia.
  
  
 0.776
HMU04120
Putative outer membrane component of efflux system; evidence=IEA; db_xref=cjejuni:Cj1031; date=20070321; method=automatic:top fasta hit.
  
  
 0.741
HMU04400
Putative protein tolB precursor; evidence=ISS; db_xref=cjejuni:Cj0112; date=20070321; method=automatic:reciprocal fasta.
  
  
 0.740
HMU04770
Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj0530; date=20070321; method=automatic:top fasta hit.
  
    0.728
HMU04420
Putative periplasmic protein; evidence=ISS; db_xref=cjejuni:Cj0114; date=20070321; method=automatic:top fasta hit.
  
   
 0.726
HMU02950
Putative lipoprotein; evidence=ISS; db_xref=cjejuni:Cj1074c; date=20070321; method=automatic:reciprocal fasta.
  
  
 0.723
HMU05080
Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj1009c; date=20070321; method=automatic:reciprocal fasta.
  
     0.718
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.