STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspBAspartate aminotransferase; evidence=ISS; db_xref=cjejuni:Cj0762c; date=20070321; method=automatic:reciprocal fasta. (388 aa)    
Predicted Functional Partners:
pheA
Chorismate mutaseprephenate dehydratase; evidence=ISS; db_xref=cjejuni:Cj0316; date=20070321; method=automatic:reciprocal fasta.
 
 
 0.970
putA
Putative proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
   
 0.949
hisC
Probable histidinol-phosphate aminotransferase; evidence=ISS; db_xref=cjejuni:Cj0317; date=20070321; method=automatic:reciprocal fasta; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
 
 
 0.926
argG
Argininosuccinate synthase; evidence=ISS; db_xref=cjejuni:Cj0665c; date=20070321; method=automatic:reciprocal fasta; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
 0.917
pyrB
Aspartate carbamoyltransferase; evidence=ISS; db_xref=cjejuni:Cj1098; date=20070321; method=automatic:reciprocal fasta; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
  
  0.915
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
   
 0.910
tyrA
Putative prephenate dehydrogenase; evidence=ISS; db_xref=cjejuni:Cj0130; date=20070321; method=automatic:reciprocal fasta.
    
 0.910
gdh
NADP-specific glutamate dehydrogenase; evidence=ISS; db_xref=suberis:SUB0762; date=20070321; method=automatic:reciprocal fasta; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.909
aspA
Aspartate ammonia-lyase; evidence=ISS; db_xref=cjejuni:Cj0087; date=20070321; method=automatic:reciprocal fasta.
    
 0.909
argJ
Putative arginine biosynthesis bifunctional protein; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.
     
 0.908
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.