Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HMU07660Putative hypothetical protein; evidence=ISS. (90 aa)    
Predicted Functional Partners:
cznC
Putative Cadmium-zinc-nickel outer membrane efflux protein, CznC; 16790756; ; evidence=ISS.
       0.814
cznB
Putative Cadmium-zinc-nickel resistance protein, CznB; 16790756; ; evidence=ISS.
       0.814
cznA
Putative Cadmium-zinc-nickel resistance protein, cznA; 16790756; ; evidence=ISS; db_xref=bcenocepacia:CAM0713; date=20070321; method=automatic:reciprocal fasta; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.814
glyS
glycyl-tRNA synthetase beta chain; evidence=ISS; db_xref=cjejuni:Cj1234; date=20070321; method=automatic:reciprocal fasta.
       0.538
HMU07610
Putative hypothetical protein; evidence=ISS.
       0.452
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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