STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMU07710Putative ankyrin-repeat containing protein; evidence=ISS; db_xref=cjejuni:Cj1386; date=20070321; method=automatic:top fasta hit. (205 aa)    
Predicted Functional Partners:
rpoC
Putative DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.792
HMU02730
Putative transmembrane protein; evidence=ISS; db_xref=cjejuni:Cj0390; date=20070321; method=automatic:reciprocal fasta.
   
 0.751
HMU07530
Probable AAA family ATPase; evidence=ISS; db_xref=cjejuni:Cj0377; date=20070321; method=automatic:reciprocal fasta.
    
 0.724
HMU04560
Putative Ankyrin repeat protein; evidence=ISS.
  
     0.718
glpF
Putative glycerol uptake facilitator protein; evidence=ISS; db_xref=bpseudomallei:BPSL0686; date=20070321; method=automatic:reciprocal fasta; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 0.718
ppi
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 
 0.704
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
  0.704
rpsC
30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
   0.694
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
       0.572
HMU07730
Putative Na+/H+ Antiporter; evidence=ISS; db_xref=cjejuni:Cj1684c; date=20070321; method=automatic:reciprocal fasta.
       0.561
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.