STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMU07730Putative Na+/H+ Antiporter; evidence=ISS; db_xref=cjejuni:Cj1684c; date=20070321; method=automatic:reciprocal fasta. (394 aa)    
Predicted Functional Partners:
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
       0.801
HMU05080
Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj1009c; date=20070321; method=automatic:reciprocal fasta.
 
     0.662
HMU05250
Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj0881c; date=20070321; method=automatic:reciprocal fasta.
 
     0.570
HMU07710
Putative ankyrin-repeat containing protein; evidence=ISS; db_xref=cjejuni:Cj1386; date=20070321; method=automatic:top fasta hit.
       0.561
HMU10570
Putative predicted ATPase; evidence=ISS.
 
     0.557
HMU11660
Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj1495c; date=20070321; method=automatic:reciprocal fasta.
  
     0.504
HMU09640
Putative integral membrane protein; evidence=ISS; db_xref=cjejuni:Cj0232c; date=20070321; method=automatic:top fasta hit.
  
     0.485
dapD
Possible 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; Catalyzes the conversion of the cyclic tetrahydrodipicolinate (THDP) into the acyclic N-succinyl-L-2-amino-6-oxopimelate using succinyl-CoA.
       0.468
HMU07750
Putative Sel1 repeat domain protein; Hydrolyzes 6-aminopenicillinic acid and 7- aminocephalosporanic acid (ACA) derivatives.
       0.468
atpF-2
ATP synthase F0 sector B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
  
     0.449
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.