STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMU07910Putative ABC-type amino-acid transporter permease protein, partial gene (pseudogene); PS00402 Binding-protein-dependent transport systems inner membrane comp. sign. (873 aa)    
Predicted Functional Partners:
HMU04120
Putative outer membrane component of efflux system; evidence=IEA; db_xref=cjejuni:Cj1031; date=20070321; method=automatic:top fasta hit.
  
     0.768
HMU09720
Putative MFS-domain protein; evidence=ISS.
  
     0.753
HMU09930
Putative outer membrane protein; evidence=ISS.
  
     0.753
HMU04770
Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj0530; date=20070321; method=automatic:top fasta hit.
  
     0.752
HMU13950
Putative periplasmic protein; evidence=ISS.
  
     0.751
HMU03420
Putative hypothetical protein; evidence=ISS.
  
     0.716
HMU04420
Putative periplasmic protein; evidence=ISS; db_xref=cjejuni:Cj0114; date=20070321; method=automatic:top fasta hit.
  
     0.702
HMU07550
Putative surface-anchored protein; evidence=ISS; db_xref=ssuis:SSU0253; date=20070321; method=automatic:top fasta hit.
  
     0.690
HMU10750
Putative hypothetical protein (pseudogene); evidence=ISS.
  
     0.679
HMU01040
Putative Major Facilitator Superfamily protein (pseudogene); 1 probable transmembrane helix predicted for HMU01030 by TMHMM2.0 at aa 10-32.
  
     0.663
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.