STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
HMU07940Putative D-2-hydroxyacid dehydrogenase; evidence=ISS; db_xref=cjejuni:Cj0373; date=20070321; method=automatic:reciprocal fasta; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (314 aa)    
Predicted Functional Partners:
dxr
Putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4- phosphate (MEP); Belongs to the DXR family.
     
 0.663
cdsA
Phosphatidate cytidylyltransferase; evidence=ISS; db_xref=cjejuni:Cj1347c; date=20070321; method=automatic:reciprocal fasta; Belongs to the CDS family.
     
 0.661
argB
Putative acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily.
       0.640
dld
Putative D-lactate dehydrogenase, Dld; evidence=ISS; db_xref=cjejuni:Cj1585c; date=20070321; method=automatic:reciprocal fasta.
   
 
 0.487
flaG
Possible flagellar protein.
    
   0.457
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.429
HMU07910
Putative ABC-type amino-acid transporter permease protein, partial gene (pseudogene); PS00402 Binding-protein-dependent transport systems inner membrane comp. sign.
       0.401
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.