STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HMU08030Putative hypothetical protein; evidence=ISS; db_xref=cjejuni:Cj0073c; date=20070321; method=automatic:reciprocal fasta. (209 aa)    
Predicted Functional Partners:
HMU08040
Putative iron-sulfur protein; evidence=ISS; db_xref=cjejuni:Cj0074c; date=20070321; method=automatic:reciprocal fasta.
 
 
 0.996
HMU08050
Putative oxidoreductase iron-sulfur subunit; evidence=ISS; db_xref=cjejuni:Cj0075c; date=20070321; method=automatic:reciprocal fasta.
 
 
 0.980
HMU09940
Putative oxidoreductase ferredoxin-type electron transport protein; evidence=ISS; db_xref=cjejuni:Cj0991c; date=20070321; method=automatic:reciprocal fasta.
 
 
 0.874
dld
Putative D-lactate dehydrogenase, Dld; evidence=ISS; db_xref=cjejuni:Cj1585c; date=20070321; method=automatic:reciprocal fasta.
 
 
 0.798
HMU08060
Putative integral membrane protein; evidence=ISS; db_xref=cjejuni:Cj0313; date=20070321; method=automatic:reciprocal fasta.
       0.605
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
       0.605
rplY
Ribosomal protein L25, ctc protein homolog; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
       0.605
HMU00340
Phosphate acetyl/butaryl transferase; evidence=ISS; db_xref=bparapertussis:BPP1169; date=20070321; method=automatic:reciprocal fasta.
  
  
 0.568
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
    0.546
lctP
L-lactate permease; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
 
   
 0.508
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.