STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HMU10190Putative catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family. (317 aa)    
Predicted Functional Partners:
glcD
Putative glycolate oxidase subunit D; evidence=ISS; db_xref=cjejuni:Cj1213c; date=20070321; method=automatic:reciprocal fasta.
   
  0.907
HMU09940
Putative oxidoreductase ferredoxin-type electron transport protein; evidence=ISS; db_xref=cjejuni:Cj0991c; date=20070321; method=automatic:reciprocal fasta.
     
  0.900
katA
Catalase; evidence=ISS; db_xref=bparapertussis:BPP4406; date=20070321; method=automatic:reciprocal fasta.
     
  0.900
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.685
HMU04120
Putative outer membrane component of efflux system; evidence=IEA; db_xref=cjejuni:Cj1031; date=20070321; method=automatic:top fasta hit.
  
     0.650
HMU10750
Putative hypothetical protein (pseudogene); evidence=ISS.
  
     0.649
ahpC
Alkyl hydroperoxide reductase; evidence=ISS; db_xref=cjejuni:Cj0334; date=20070321; method=automatic:reciprocal fasta.
   
 
 0.635
clpP
ATP-dependent clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
     
 0.623
HMU10200
Putative Mg-chetalase related protein; evidence=ISS; db_xref=cjejuni:Cj0190c; date=20070321; method=automatic:reciprocal fasta.
       0.618
def
Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.617
Your Current Organism:
Helicobacter mustelae
NCBI taxonomy Id: 679897
Other names: H. mustelae 12198, Helicobacter mustelae 12198, Helicobacter mustelae str. 12198, Helicobacter mustelae strain 12198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.