STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEH60220.1Lysine 2,3-aminomutase YodO family protein; COGs: COG1509 Lysine 2 3-aminomutase; InterPro IPR003739:IPR007197; KEGG: cpb:Cphamn1_1421 lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; PRIAM: Lysine 2,3-aminomutase; SPTR: Q1JXY4 Putative uncharacterized protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; TIGRFAM: KamA family protein. (358 aa)    
Predicted Functional Partners:
AEH60898.1
Lysine 2,3-aminomutase YodO family protein; COGs: COG1509 Lysine 2 3-aminomutase; InterPro IPR003739:IPR007197; KEGG: mbu:Mbur_0274 L-lysine 2,3-aminomutase; PFAM: Radical SAM domain protein; PRIAM: Lysine 2,3-aminomutase; SPTR: Q12Z47 L-lysine 2,3-aminomutase; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Lysine-2,3-aminomutase; Radical SAM superfamily; TIGRFAM: KamA family protein.
  
  
 
0.906
AEH60883.1
Radical SAM domain protein; COGs: COG0502 Biotin synthase; InterPro IPR006638:IPR005244:IPR007197:IPR013785; KEGG: mac:MA0154 biotin synthase; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q8TUB9 Biotin synthase; PFAM: Radical SAM superfamily.
    
 0.830
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
 0.814
AEH60884.1
Protein of unknown function DUF201; COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterPro IPR003806:IPR011761; KEGG: mba:Mbar_A0837 hypothetical protein; PFAM: protein of unknown function DUF201; SPTR: Q46E79 Putative uncharacterized protein; PFAM: ATP-grasp domain.
     
  0.800
AEH60446.1
MCP methyltransferase, CheR-type; COGs: COG1352 Methylase of chemotaxis methyl-accepting protein; InterPro IPR000780; KEGG: mba:Mbar_A0983 chemotaxis protein methyltransferase; PFAM: MCP methyltransferase CheR-type; PRIAM: Protein-glutamate O-methyltransferase; SMART: MCP methyltransferase CheR-type; SPTR: Q46DT8 Chemotaxis protein methyltransferase; PFAM: CheR methyltransferase, SAM binding domain; CheR methyltransferase, all-alpha domain.
    
   0.673
AEH60899.1
InterPro IPR000182:IPR016181; KEGG: mbu:Mbur_0273 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase; SPTR: Q12Z48 Acetyltransferase (GNAT) family protein.
  
 0.667
AEH60219.1
Putative PAS/PAC sensor protein; COGs: COG0784 FOG: CheY-like receiver; InterPro IPR011006:IPR001789:IPR000014:IPR013767; KEGG: npu:Npun_F3678 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: response regulator receiver; PAS fold domain protein; SMART: response regulator receiver; PAS domain containing protein; SPTR: B2J301 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S); PFAM: Response regulator receiver domain; PAS fold.
       0.508
Your Current Organism:
Methanosalsum zhilinae
NCBI taxonomy Id: 679901
Other names: M. zhilinae DSM 4017, Methanosalsum zhilinae DSM 4017, Methanosalsum zhilinae str. DSM 4017, Methanosalsum zhilinae strain DSM 4017
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