STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gltXglutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu). (571 aa)    
Predicted Functional Partners:
rpl21e
COGs: COG2139 Ribosomal protein L21E; InterPro IPR008991:IPR001147; KEGG: mba:Mbar_A3231 50S ribosomal protein L21e; PFAM: Ribosomal protein L21e; SPTR: Q466S9 50S ribosomal protein L21e; PFAM: Ribosomal protein L21e; Belongs to the eukaryotic ribosomal protein eL21 family.
  
 0.974
rps9
COGs: COG0103 Ribosomal protein S9; InterProIPR000754:IPR020574:IPR014721:IPR020568:IPR 019958; KEGG: mbu:Mbur_2390 30S ribosomal protein S9P; PFAM: ribosomal protein S9; SPTR: Q12TI5 30S ribosomal protein S9P; TIGRFAM: ribosomal protein S9P; PFAM: Ribosomal protein S9/S16; TIGRFAM: archaeal ribosomal protein S9P; Belongs to the universal ribosomal protein uS9 family.
 
 0.968
rpl13
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 0.967
rpl30e
COGs: COG1911 Ribosomal protein L30E; InterPro IPR000231:IPR004038; KEGG: mma:MM_2269 50S ribosomal protein L30e; PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; SPTR: Q8PUR3 50S ribosomal protein L30e; PFAM: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; Belongs to the eukaryotic ribosomal protein eL30 family.
   
 0.965
rpl23
Ribosomal protein L23; Binds to 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Belongs to the universal ribosomal protein uL23 family.
  
 0.965
rpl18
Ribosomal protein L18P/L5E; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.
 
 0.963
rpl6
Ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
  
 0.959
rpl24e
Ribosomal protein L24E; Binds to the 23S rRNA.
  
 0.959
rpl31e
COGs: COG2097 Ribosomal protein L31E; InterPro IPR000054:IPR020052; KEGG: mbu:Mbur_0114 50S ribosomal protein L31e; PFAM: Ribosomal protein L31e; SPTR: Q12ZJ4 LSU ribosomal protein L31E; PFAM: Ribosomal protein L31e; Belongs to the ribosomal protein L31e family.
   
 0.957
rpl44e
Ribosomal protein L44E; Binds to the 23S rRNA.
  
 0.956
Your Current Organism:
Methanosalsum zhilinae
NCBI taxonomy Id: 679901
Other names: M. zhilinae DSM 4017, Methanosalsum zhilinae DSM 4017, Methanosalsum zhilinae str. DSM 4017, Methanosalsum zhilinae strain DSM 4017
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.