STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
secFSecD/SecF/SecDF export membrane protein; Involved in protein export. (299 aa)    
Predicted Functional Partners:
secD
SecD/SecF/SecDF export membrane protein; Involved in protein export.
 
 0.999
AEH61572.1
Replication factor C; COGs: COG2812 DNA polymerase III gamma/tau subunits; InterPro IPR003959:IPR013748:IPR008921:IPR003593; KEGG: mac:MA0140 replication factor C small subunit 2; PFAM: Replication factor C; AAA ATPase central domain protein; SMART: AAA ATPase; SPTR: Q8TUC8 Replication factor C subunit; PFAM: ATPase family associated with various cellular activities (AAA); Replication factor C.
       0.780
AEH61573.1
Histone acetyltransferase, ELP3 family; COGs: COG1243 Histone acetyltransferase; InterProIPR000182:IPR016181:IPR007197:IPR005910:IPR 006638; KEGG: mbu:Mbur_1989 ELP3 family histone acetyltransferase; PFAM: Radical SAM domain protein; GCN5-related N-acetyltransferase; SMART: Elongator protein 3/MiaB/NifB; SPTR: Q12UK8 Elongator complex protein 3; TIGRFAM: histone acetyltransferase, ELP3 family; PFAM: Acetyltransferase (GNAT) family; Radical SAM superfamily; TIGRFAM: histone acetyltransferase, ELP3 family.
       0.700
AEH59883.1
Peptidase S26B, signal peptidase; InterPro IPR015927:IPR001733; KEGG: mma:MM_1344 signal sequence peptidase; SPTR: Q8PX78 Signal sequence peptidase; TIGRFAM: peptidase S26B, signal peptidase; PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
  
  
 0.590
AEH59933.1
Phosphoesterase RecJ domain protein; COGs: COG1107 RecJ-like exonuclease contains DnaJ-type Zn finger domain; InterProIPR016027:IPR001305:IPR003029:IPR012340:IPR 004365:IPR001667; KEGG: mbu:Mbur_1805 phosphoesterase, RecJ-like protein; PFAM: phosphoesterase RecJ domain protein; nucleic acid binding OB-fold tRNA/helicase-type; RNA binding S1 domain protein; SPTR: Q12V35 Nucleic acid binding protein; PFAM: DHH family; DnaJ central domain (4 repeats); S1 RNA binding domain; OB-fold nucleic acid binding domain.
 
     0.584
AEH60403.1
Protein of unknown function DUF71 ATP-binding region; COGs: COG2117 subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase contains the PP-loop ATPase domain; InterPro IPR002761; KEGG: mma:MM_0804 ATP-binding protein; PFAM: protein of unknown function DUF71 ATP-binding region; SPTR: Q8PYQ6 Hypothetical ATP-binding protein.
  
     0.528
AEH60663.1
DEAD/DEAH box helicase domain protein; COGs: COG1202 Superfamily II helicase; InterPro IPR011545:IPR001650:IPR014001:IPR014021; KEGG: mbu:Mbur_0179 DEAD/DEAH box helicase-like protein; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; SPTR: Q12ZD6 DEAD/DEAH box helicase-like protein; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase.
  
     0.520
AEH61569.1
CMP/dCMP deaminase zinc-binding protein; COGs: COG2131 Deoxycytidylate deaminase; InterPro IPR016192:IPR002125:IPR016473:IPR016193; KEGG: mbu:Mbur_1985 CMP/dCMP deaminase, zinc-binding; PFAM: CMP/dCMP deaminase zinc-binding; SPTR: Q12UL2 dCMP deaminase; PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region.
       0.519
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
 
  
 0.509
AEH61574.1
InterPro IPR001845; KEGG: mbu:Mbur_1990 hypothetical protein; SPTR: Q12UK7 Putative uncharacterized protein; PFAM: Sugar-specific transcriptional regulator TrmB.
       0.505
Your Current Organism:
Methanosalsum zhilinae
NCBI taxonomy Id: 679901
Other names: M. zhilinae DSM 4017, Methanosalsum zhilinae DSM 4017, Methanosalsum zhilinae str. DSM 4017, Methanosalsum zhilinae strain DSM 4017
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