STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl10Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (345 aa)    
Predicted Functional Partners:
rps17e
COGs: COG1383 Ribosomal protein S17E; InterPro IPR018273:IPR001210; KEGG: mba:Mbar_A1149 30S ribosomal protein S17e; PFAM: Ribosomal protein S17e; SPTR: Q46DC5 30S ribosomal protein S17e; PFAM: Ribosomal S17; Belongs to the eukaryotic ribosomal protein eS17 family.
  
 
 0.999
rpl40e
KEGG: mba:Mbar_A0674 50S ribosomal protein L40e; SPTR: Q46EN9 50S ribosomal protein L40e; manually curated; Belongs to the eukaryotic ribosomal protein eL40 family.
  
 0.999
rpl44e
Ribosomal protein L44E; Binds to the 23S rRNA.
 
 0.999
rps24e
COGs: COG2004 Ribosomal protein S24E; InterPro IPR018098:IPR012677:IPR001976; KEGG: mma:MM_0599 30S ribosomal protein S24e; PFAM: Ribosomal protein S24e; SPTR: Q8PZ95 30S ribosomal protein S24e; PFAM: Ribosomal protein S24e; Belongs to the eukaryotic ribosomal protein eS24 family.
  
 
 0.999
rpl30e
COGs: COG1911 Ribosomal protein L30E; InterPro IPR000231:IPR004038; KEGG: mma:MM_2269 50S ribosomal protein L30e; PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; SPTR: Q8PUR3 50S ribosomal protein L30e; PFAM: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; Belongs to the eukaryotic ribosomal protein eL30 family.
   
 0.999
rps12
Ribosomal protein S23 (S12); With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits. Belongs to the universal ribosomal protein uS12 family.
 
 
 0.999
rps7
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center; Belongs to the universal ribosomal protein uS7 family.
  
 
 0.999
fusA
Translation elongation factor aEF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF [...]
 
 0.999
rps10
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
 
 
 0.999
rps19e
Ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
 
 
 0.999
Your Current Organism:
Methanosalsum zhilinae
NCBI taxonomy Id: 679901
Other names: M. zhilinae DSM 4017, Methanosalsum zhilinae DSM 4017, Methanosalsum zhilinae str. DSM 4017, Methanosalsum zhilinae strain DSM 4017
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