Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Mpet_0367KEGG: mla:Mlab_1535 hypothetical protein; SPTR: Putative uncharacterized protein. (873 aa)    
Predicted Functional Partners:
Mpet_0368
KEGG: mla:Mlab_1536 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.777
Mpet_0369
COGs: COG0630 Type IV secretory pathway VirB11 protein involved in flagella biosynthesis; InterPro IPR001482; KEGG: mla:Mlab_1537 aminoacyl-tRNA hydrolase; PFAM: type II secretion system protein E; SPTR: Type II secretion system protein E; PFAM: Type II/IV secretion system protein.
       0.777
Mpet_0370
Type II secretion system F domain protein; COGs: COG1955 flagella assembly protein J; InterPro IPR018076; KEGG: mla:Mlab_1538 hypothetical protein; PFAM: Type II secretion system F domain; SPTR: Type II secretion system protein; PFAM: Bacterial type II secretion system protein F domain.
       0.777
Mpet_0371
KEGG: mbn:Mboo_2383 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.737
Your Current Organism:
Methanolacinia petrolearia
NCBI taxonomy Id: 679926
Other names: M. petrolearia DSM 11571, Methanolacinia petrolearia DSM 11571, Methanoplanus petrolearius DSM 11571, Methanoplanus petrolearius SEBR 4847
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