STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Alfi_0091Hypothetical protein. (281 aa)    
Predicted Functional Partners:
Alfi_0092
Hypothetical protein.
 
    
0.839
Alfi_0295
Hypothetical protein.
  
     0.593
Alfi_0852
Hypothetical protein.
  
     0.593
Alfi_2217
Hypothetical protein.
  
     0.576
Alfi_1693
PFAM: TonB-dependent Receptor Plug Domain; Gram-negative bacterial tonB protein.
  
 
   0.527
Alfi_2881
DNA segregation ATPase, FtsK/SpoIIIE family; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family.
   
 
 0.482
Alfi_0851
Hypothetical protein.
  
     0.480
Alfi_0294
Hypothetical protein.
  
     0.478
Alfi_2362
Hypothetical protein.
    
 
 0.467
Alfi_2218
Hypothetical protein.
  
     0.432
Your Current Organism:
Alistipes finegoldii
NCBI taxonomy Id: 679935
Other names: A. finegoldii DSM 17242, Alistipes finegoldii AHN 2437, Alistipes finegoldii CIP 107999, Alistipes finegoldii DSM 17242, Alistipes finegoldii str. DSM 17242, Alistipes finegoldii strain DSM 17242
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.