STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Alfi_0309TonB-linked outer membrane protein, SusC/RagA family; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family. (1099 aa)    
Predicted Functional Partners:
Alfi_0310
RagB/SusD family protein; PFAM: SusD family.
 
   0.938
Alfi_0311
Hypothetical protein.
 
    0.913
Alfi_0312
Hypothetical protein.
 
    0.908
Alfi_0301
RagB/SusD family protein; PFAM: SusD family.
 
   0.822
Alfi_0299
Hypothetical protein.
 
    0.808
Alfi_0300
Hypothetical protein.
 
    0.808
Alfi_1105
Hypothetical protein.
  
 
 
 0.797
Alfi_0898
Hypothetical protein.
  
 
 
 0.796
Alfi_0070
Hypothetical protein.
  
 
 
 0.795
Alfi_0056
Hypothetical protein.
  
 
 
 0.794
Your Current Organism:
Alistipes finegoldii
NCBI taxonomy Id: 679935
Other names: A. finegoldii DSM 17242, Alistipes finegoldii AHN 2437, Alistipes finegoldii CIP 107999, Alistipes finegoldii DSM 17242, Alistipes finegoldii str. DSM 17242, Alistipes finegoldii strain DSM 17242
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.