STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Alfi_0526PFAM: RecT family; TIGRFAM: recombinase, phage RecT family. (309 aa)    
Predicted Functional Partners:
Alfi_0527
Putative hydrolase of the metallo-beta-lactamase superfamily; PFAM: Metallo-beta-lactamase superfamily.
       0.735
Alfi_0528
Hypothetical protein.
       0.723
Alfi_0529
Hypothetical protein.
       0.723
Alfi_0525
Hypothetical protein.
       0.709
Alfi_0530
Hypothetical protein.
       0.701
Alfi_0524
Hypothetical protein.
 
   
 0.689
Alfi_0520
Hypothetical protein.
       0.579
Alfi_0521
Hypothetical protein.
       0.579
Alfi_0522
TIGRFAM: DNA binding domain, excisionase family.
       0.579
Alfi_0523
Hypothetical protein.
       0.579
Your Current Organism:
Alistipes finegoldii
NCBI taxonomy Id: 679935
Other names: A. finegoldii DSM 17242, Alistipes finegoldii AHN 2437, Alistipes finegoldii CIP 107999, Alistipes finegoldii DSM 17242, Alistipes finegoldii str. DSM 17242, Alistipes finegoldii strain DSM 17242
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.