STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Alfi_0579PFAM: Type I restriction modification DNA specificity domain. (408 aa)    
Predicted Functional Partners:
Alfi_0581
PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM).
 
 
 0.981
Alfi_0583
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.964
Alfi_0709
Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA Methylase.
 
 
 0.857
Alfi_0580
Virulence protein.
  
    0.819
Alfi_0582
T5orf172 domain-containing protein; PFAM: T5orf172 domain.
       0.781
Alfi_0584
Plasmid maintenance system antidote protein; PFAM: Helix-turn-helix.
       0.695
Alfi_0553
Helicase family protein; PFAM: N-6 DNA Methylase; Helicase conserved C-terminal domain.
  
 
 0.676
Alfi_2702
DNA methylase; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
  
 
 0.676
Alfi_1804
PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM).
  
 
 0.674
Alfi_0577
PFAM: Type I restriction modification DNA specificity domain.
  
     0.663
Your Current Organism:
Alistipes finegoldii
NCBI taxonomy Id: 679935
Other names: A. finegoldii DSM 17242, Alistipes finegoldii AHN 2437, Alistipes finegoldii CIP 107999, Alistipes finegoldii DSM 17242, Alistipes finegoldii str. DSM 17242, Alistipes finegoldii strain DSM 17242
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.