Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Alfi_0420 | Alfi_0421 | PFAM: Protein of unknown function (DUF1237). | PFAM: Glycosyl hydrolase family 76. | 0.802 |
Alfi_0420 | Alfi_0424 | PFAM: Protein of unknown function (DUF1237). | PFAM: Glycosyl hydrolase family 76. | 0.490 |
Alfi_0420 | Alfi_1071 | PFAM: Protein of unknown function (DUF1237). | PFAM: Putative glycosyl hydrolase of unknown function (DUF1680). | 0.461 |
Alfi_0421 | Alfi_0420 | PFAM: Glycosyl hydrolase family 76. | PFAM: Protein of unknown function (DUF1237). | 0.802 |
Alfi_0421 | Alfi_1071 | PFAM: Glycosyl hydrolase family 76. | PFAM: Putative glycosyl hydrolase of unknown function (DUF1680). | 0.486 |
Alfi_0421 | Alfi_1398 | PFAM: Glycosyl hydrolase family 76. | Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family. | 0.475 |
Alfi_0424 | Alfi_0420 | PFAM: Glycosyl hydrolase family 76. | PFAM: Protein of unknown function (DUF1237). | 0.490 |
Alfi_0424 | Alfi_1071 | PFAM: Glycosyl hydrolase family 76. | PFAM: Putative glycosyl hydrolase of unknown function (DUF1680). | 0.531 |
Alfi_0424 | Alfi_1398 | PFAM: Glycosyl hydrolase family 76. | Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2, sugar binding domain; Belongs to the glycosyl hydrolase 2 family. | 0.477 |
Alfi_1070 | Alfi_1071 | Hypothetical protein. | PFAM: Putative glycosyl hydrolase of unknown function (DUF1680). | 0.789 |
Alfi_1070 | Alfi_1072 | Hypothetical protein. | PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain. | 0.704 |
Alfi_1070 | Alfi_1820 | Hypothetical protein. | PFAM: Alpha-L-fucosidase. | 0.401 |
Alfi_1070 | Alfi_2406 | Hypothetical protein. | PFAM: Protein of unknown function (DUF2961). | 0.534 |
Alfi_1070 | Alfi_2846 | Hypothetical protein. | PFAM: Alpha-L-fucosidase. | 0.405 |
Alfi_1071 | Alfi_0420 | PFAM: Putative glycosyl hydrolase of unknown function (DUF1680). | PFAM: Protein of unknown function (DUF1237). | 0.461 |
Alfi_1071 | Alfi_0421 | PFAM: Putative glycosyl hydrolase of unknown function (DUF1680). | PFAM: Glycosyl hydrolase family 76. | 0.486 |
Alfi_1071 | Alfi_0424 | PFAM: Putative glycosyl hydrolase of unknown function (DUF1680). | PFAM: Glycosyl hydrolase family 76. | 0.531 |
Alfi_1071 | Alfi_1070 | PFAM: Putative glycosyl hydrolase of unknown function (DUF1680). | Hypothetical protein. | 0.789 |
Alfi_1071 | Alfi_1072 | PFAM: Putative glycosyl hydrolase of unknown function (DUF1680). | PFAM: Glycosyl hydrolase family 3 C terminal domain; Glycosyl hydrolase family 3 N terminal domain. | 0.822 |
Alfi_1071 | Alfi_1073 | PFAM: Putative glycosyl hydrolase of unknown function (DUF1680). | PFAM: Y_Y_Y domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Two component regulator propeller; His Kinase A (phosphoacceptor) domain. | 0.481 |
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