STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Alfi_1114Lysine 2,3-aminomutase; TIGRFAM: KamA family protein. (698 aa)    
Predicted Functional Partners:
Alfi_3014
Saccharopine dehydrogenase-like oxidoreductase; PFAM: Saccharopine dehydrogenase.
     
  0.900
Alfi_3178
PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; TIGRFAM: diaminopimelate decarboxylase.
     
 0.804
Alfi_0421
PFAM: Glycosyl hydrolase family 76.
  
     0.635
Alfi_2546
Hypothetical protein.
  
     0.591
Alfi_2203
Hypothetical protein.
  
     0.566
Alfi_2135
Tetratricopeptide repeat protein; Manually curated.
  
     0.561
Alfi_1113
Hypothetical protein; Manually curated.
 
     0.533
Alfi_0159
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; PFAM: domain; Domain of unknown function; Pyruvate ferredoxin/flavodoxin oxidoreductase; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; TIGRFAM: pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric.
   
 
 0.524
Alfi_1580
Hypothetical protein.
  
     0.491
Alfi_2240
Hypothetical protein; PFAM: Uncharacterised ArCR, COG2043.
  
     0.485
Your Current Organism:
Alistipes finegoldii
NCBI taxonomy Id: 679935
Other names: A. finegoldii DSM 17242, Alistipes finegoldii AHN 2437, Alistipes finegoldii CIP 107999, Alistipes finegoldii DSM 17242, Alistipes finegoldii str. DSM 17242, Alistipes finegoldii strain DSM 17242
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.