STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Alfi_1281Phosphate/sulfate permease; PFAM: Phosphate transporter family. (747 aa)    
Predicted Functional Partners:
Alfi_1282
Hypothetical protein.
       0.750
Alfi_3219
PFAM: Plasmid pRiA4b ORF-3-like protein.
  
     0.525
Alfi_3034
Hypothetical protein.
  
     0.512
Alfi_0082
TIGRFAM: TonB family C-terminal domain.
  
   
 0.482
Alfi_0034
PFAM: Biopolymer transport protein ExbD/TolR.
  
    0.466
Alfi_1243
Putative membrane protein, required for colicin V production; PFAM: Colicin V production protein.
  
     0.463
Alfi_1172
DNA uptake lipoprotein; PFAM: Tetratricopeptide repeat; Bacterial SH3 domain.
  
     0.453
Alfi_0033
TIGRFAM: TonB family C-terminal domain.
  
   
 0.429
Alfi_1662
Hypothetical protein.
 
    0.428
Alfi_1642
Phosphopantetheinyl transferase component of siderophore synthetase; PFAM: 4'-phosphopantetheinyl transferase superfamily; Belongs to the P-Pant transferase superfamily.
 
     0.410
Your Current Organism:
Alistipes finegoldii
NCBI taxonomy Id: 679935
Other names: A. finegoldii DSM 17242, Alistipes finegoldii AHN 2437, Alistipes finegoldii CIP 107999, Alistipes finegoldii DSM 17242, Alistipes finegoldii str. DSM 17242, Alistipes finegoldii strain DSM 17242
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.