STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recORecombinational DNA repair protein (RecF pathway); Involved in DNA repair and RecF pathway recombination. (242 aa)    
Predicted Functional Partners:
recR
DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
  
 
 0.921
Alfi_1390
PFAM: Ribosomal protein L11 methyltransferase (PrmA).
       0.794
Alfi_0606
Putative metal-binding protein, possibly nucleic-acid binding protein; PFAM: Uncharacterized ACR, COG1399.
 
     0.766
Alfi_1981
Hypothetical protein.
  
     0.759
Alfi_0036
Hypothetical protein.
 
     0.748
Alfi_2082
Hypothetical protein.
 
     0.726
Alfi_2644
Phosphate starvation-inducible protein PhoH, predicted ATPase; PFAM: PhoH-like protein.
  
  
 0.725
Alfi_1407
TIGRFAM: DNA polymerase III, delta' subunit.
 
 
 
 0.716
Alfi_1336
PFAM: Uroporphyrinogen-III synthase HemD.
  
    0.678
Alfi_2811
Hypothetical protein.
  
     0.664
Your Current Organism:
Alistipes finegoldii
NCBI taxonomy Id: 679935
Other names: A. finegoldii DSM 17242, Alistipes finegoldii AHN 2437, Alistipes finegoldii CIP 107999, Alistipes finegoldii DSM 17242, Alistipes finegoldii str. DSM 17242, Alistipes finegoldii strain DSM 17242
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.