STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Alfi_1431Putative membrane protein; PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN). (434 aa)    
Predicted Functional Partners:
Alfi_1433
PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family.
 
     0.766
Alfi_1432
Hypothetical protein; PFAM: NADP oxidoreductase coenzyme F420-dependent; Domain of unknown function (DUF2520).
       0.723
Alfi_1429
PFAM: Competence protein; TIGRFAM: ComEC/Rec2-related protein.
  
  
 0.615
Alfi_1430
SAM-dependent methyltransferase, tRNA(uracil-5)-methyltransferase.
       0.576
guaB
Inosine-5''-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
   0.479
Alfi_0594
Putative membrane protein; PFAM: SNARE associated Golgi protein.
  
     0.429
Alfi_1428
Hypothetical protein.
       0.418
Alfi_1426
Hypothetical protein.
       0.404
Alfi_1427
Phage-related holin (lysis protein); PFAM: Holin family.
       0.404
Your Current Organism:
Alistipes finegoldii
NCBI taxonomy Id: 679935
Other names: A. finegoldii DSM 17242, Alistipes finegoldii AHN 2437, Alistipes finegoldii CIP 107999, Alistipes finegoldii DSM 17242, Alistipes finegoldii str. DSM 17242, Alistipes finegoldii strain DSM 17242
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.