STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Alfi_15363-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase; PFAM: FabA-like domain. (122 aa)    
Predicted Functional Partners:
Alfi_1549
Dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein; PFAM: short chain dehydrogenase.
 
 0.994
Alfi_1539
Hypothetical protein.
 
 
 0.977
Alfi_1542
PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.972
acpP-2
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
 
 
 0.971
Alfi_1541
Acyl carrier protein; PFAM: Phosphopantetheine attachment site; TIGRFAM: acyl carrier protein.
 
 
 0.968
Alfi_1548
PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.965
Alfi_1540
PFAM: Beta-ketoacyl synthase, N-terminal domain; Beta-ketoacyl synthase, C-terminal domain; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.964
Alfi_1534
Putative RND superfamily exporter; PFAM: Acyltransferase; MMPL family; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases.
 
   
 0.955
Alfi_1532
Putative choloylglycine hydrolase; PFAM: Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase.
 
     0.951
Alfi_1531
Coenzyme F390 synthetase; PFAM: AMP-binding enzyme.
 
   
 0.950
Your Current Organism:
Alistipes finegoldii
NCBI taxonomy Id: 679935
Other names: A. finegoldii DSM 17242, Alistipes finegoldii AHN 2437, Alistipes finegoldii CIP 107999, Alistipes finegoldii DSM 17242, Alistipes finegoldii str. DSM 17242, Alistipes finegoldii strain DSM 17242
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