STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Alfi_2985PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (483 aa)    
Predicted Functional Partners:
Alfi_2986
Hypothetical protein.
       0.780
Alfi_2989
Hypothetical protein.
 
  
 0.741
Alfi_2987
PFAM: Yqey-like protein.
       0.678
Alfi_2988
Hypothetical protein.
       0.666
Alfi_3220
NAD-dependent aldehyde dehydrogenase; PFAM: Acyl-CoA reductase (LuxC).
 
  
 0.651
Alfi_1289
PFAM: Carbon starvation protein CstA.
  
    0.589
Alfi_0357
PFAM: Protein of unknown function (DUF1343).
     0.547
Alfi_2393
Putative N-acetylglucosamine kinase; PFAM: BadF/BadG/BcrA/BcrD ATPase family.
 
     0.491
Alfi_3041
PAS domain S-box; PFAM: Response regulator receiver domain; GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; TIGRFAM: PAS domain S-box.
  
  
 0.449
Alfi_0027
Dipeptide/tripeptide permease; PFAM: POT family.
 
 
 0.431
Your Current Organism:
Alistipes finegoldii
NCBI taxonomy Id: 679935
Other names: A. finegoldii DSM 17242, Alistipes finegoldii AHN 2437, Alistipes finegoldii CIP 107999, Alistipes finegoldii DSM 17242, Alistipes finegoldii str. DSM 17242, Alistipes finegoldii strain DSM 17242
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