STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Alfi_2995Putative Fe-S oxidoreductase; PFAM: Radical SAM superfamily; TIGRFAM: radical SAM additional 4Fe4S-binding domain. (356 aa)    
Predicted Functional Partners:
Alfi_2996
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
     0.885
Alfi_2994
Glycosyltransferase; PFAM: Domain of unknown function (DUF1972); Glycosyl transferases group 1.
 
     0.860
Alfi_2997
Hypothetical protein.
       0.661
Alfi_2998
Putative membrane protein involved in D-alanine export; PFAM: MBOAT family; Belongs to the membrane-bound acyltransferase family.
       0.661
Alfi_1369
Putative glycosyltransferase; PFAM: Glycosyl transferase family 2.
      0.643
Alfi_3004
PFAM: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus.
 
     0.614
Alfi_0712
PFAM: Plasmid recombination enzyme.
 
     0.611
Alfi_3003
PFAM: Polysaccharide pyruvyl transferase.
 
    0.598
Alfi_2999
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
 
     0.596
Alfi_0618
RagB/SusD family protein; PFAM: SusD family.
  
     0.541
Your Current Organism:
Alistipes finegoldii
NCBI taxonomy Id: 679935
Other names: A. finegoldii DSM 17242, Alistipes finegoldii AHN 2437, Alistipes finegoldii CIP 107999, Alistipes finegoldii DSM 17242, Alistipes finegoldii str. DSM 17242, Alistipes finegoldii strain DSM 17242
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