STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Alfi_3200ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter. (295 aa)    
Predicted Functional Partners:
Alfi_3199
Hypothetical protein.
 
    0.954
Alfi_3198
Hypothetical protein.
 
    0.943
Alfi_3201
Hypothetical protein.
 
     0.897
Alfi_3204
Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain.
 
   
 0.856
Alfi_3202
Hypothetical protein.
 
     0.852
Alfi_3164
ABC-type multidrug transport system, permease component.
  
  
 0.725
Alfi_3197
Hypothetical protein.
 
    0.689
Alfi_2945
ABC-type bacteriocin/lantibiotic exporter with N-terminal double-glycine peptidase domain; PFAM: ABC transporter.
 
 0.658
Alfi_3203
Hypothetical protein.
       0.591
Alfi_0495
Hypothetical protein.
 
    0.590
Your Current Organism:
Alistipes finegoldii
NCBI taxonomy Id: 679935
Other names: A. finegoldii DSM 17242, Alistipes finegoldii AHN 2437, Alistipes finegoldii CIP 107999, Alistipes finegoldii DSM 17242, Alistipes finegoldii str. DSM 17242, Alistipes finegoldii strain DSM 17242
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.