Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Alfi_0329 | Alfi_2718 | Alfi_0329 | Alfi_2718 | PFAM: N-acetylmuramoyl-L-alanine amidase. | PFAM: N-acetylmuramoyl-L-alanine amidase. | 0.913 |
Alfi_0329 | Alfi_3232 | Alfi_0329 | Alfi_3232 | PFAM: N-acetylmuramoyl-L-alanine amidase. | Hypothetical protein. | 0.514 |
Alfi_2239 | Alfi_3232 | Alfi_2239 | Alfi_3232 | 5,10-methenyltetrahydrofolate synthetase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase. | Hypothetical protein. | 0.517 |
Alfi_2718 | Alfi_0329 | Alfi_2718 | Alfi_0329 | PFAM: N-acetylmuramoyl-L-alanine amidase. | PFAM: N-acetylmuramoyl-L-alanine amidase. | 0.913 |
Alfi_2718 | Alfi_3232 | Alfi_2718 | Alfi_3232 | PFAM: N-acetylmuramoyl-L-alanine amidase. | Hypothetical protein. | 0.509 |
Alfi_2986 | Alfi_3232 | Alfi_2986 | Alfi_3232 | Hypothetical protein. | Hypothetical protein. | 0.509 |
Alfi_3232 | Alfi_0329 | Alfi_3232 | Alfi_0329 | Hypothetical protein. | PFAM: N-acetylmuramoyl-L-alanine amidase. | 0.514 |
Alfi_3232 | Alfi_2239 | Alfi_3232 | Alfi_2239 | Hypothetical protein. | 5,10-methenyltetrahydrofolate synthetase; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase. | 0.517 |
Alfi_3232 | Alfi_2718 | Alfi_3232 | Alfi_2718 | Hypothetical protein. | PFAM: N-acetylmuramoyl-L-alanine amidase. | 0.509 |
Alfi_3232 | Alfi_2986 | Alfi_3232 | Alfi_2986 | Hypothetical protein. | Hypothetical protein. | 0.509 |
Alfi_3232 | Alfi_3233 | Alfi_3232 | Alfi_3233 | Hypothetical protein. | Hypothetical protein. | 0.556 |
Alfi_3232 | Alfi_3234 | Alfi_3232 | Alfi_3234 | Hypothetical protein. | Flavodoxin. | 0.530 |
Alfi_3232 | Alfi_3235 | Alfi_3232 | Alfi_3235 | Hypothetical protein. | PFAM: NADPH-dependent FMN reductase. | 0.508 |
Alfi_3232 | Alfi_3236 | Alfi_3232 | Alfi_3236 | Hypothetical protein. | Hypothetical protein; PFAM: Cupin domain; Carboxymuconolactone decarboxylase family. | 0.478 |
Alfi_3232 | tatA | Alfi_3232 | Alfi_1198 | Hypothetical protein. | Twin arginine-targeting protein translocase, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.538 |
Alfi_3232 | tatA-2 | Alfi_3232 | Alfi_2821 | Hypothetical protein. | Twin arginine-targeting protein translocase, TatA/E family; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.538 |
Alfi_3233 | Alfi_3232 | Alfi_3233 | Alfi_3232 | Hypothetical protein. | Hypothetical protein. | 0.556 |
Alfi_3233 | Alfi_3234 | Alfi_3233 | Alfi_3234 | Hypothetical protein. | Flavodoxin. | 0.847 |
Alfi_3233 | Alfi_3235 | Alfi_3233 | Alfi_3235 | Hypothetical protein. | PFAM: NADPH-dependent FMN reductase. | 0.745 |
Alfi_3233 | Alfi_3236 | Alfi_3233 | Alfi_3236 | Hypothetical protein. | Hypothetical protein; PFAM: Cupin domain; Carboxymuconolactone decarboxylase family. | 0.797 |
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