STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0005Hypothetical protein; COGs: COG1112 Superfamily I DNA and RNA helicase and helicase subunits; KEGG: bfs:BF0812 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105660. (1125 aa)    
Predicted Functional Partners:
Bcop_1769
KEGG: cpb:Cphamn1_1677 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107485.
  
    0.739
Bcop_0006
Cell wall hydrolase/autolysin; COGs: COG0860 N-acetylmuramoyl-L-alanine amidase; InterPro IPR002508; KEGG: bfs:BF3352 putative cell wall biosynthesis-like protein; PFAM: Cell wall hydrolase/autolysin, catalytic; SPTR: Cell wall biosynthesis protein; IMG reference gene:2504105661; PFAM: N-acetylmuramoyl-L-alanine amidase.
 
    0.736
Bcop_0527
KEGG: bth:BT_3578 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106201; PFAM: Protein of unknown function (DUF3316).
  
     0.692
Bcop_1405
KEGG: bfs:BF2370 putative lipoprotein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107114.
  
     0.669
Bcop_2381
KEGG: bfs:BF3160 hypothetical protein; SPTR: Putative exported protein; IMG reference gene:2504108113.
  
     0.644
Bcop_1770
KEGG: cyh:Cyan8802_2210 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107486.
  
    0.617
Bcop_2250
KEGG: bfs:BF3126 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107971.
  
     0.609
Bcop_1767
Conserved hypothetical protein CHP02688; COGs: COG4930 ATP-dependent Lon-type protease; InterPro IPR014061; KEGG: dvu:DVU2019 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02688; IMG reference gene:2504107483; TIGRFAM: TIGR02688 family protein; conserved hypothetical protein.
  
    0.589
Bcop_0369
KEGG: bfs:BF0074 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106030.
  
     0.572
Bcop_1033
KEGG: bfs:BF0922 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106735.
  
     0.570
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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