STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0076TonB family protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (232 aa)    
Predicted Functional Partners:
Bcop_0071
InterPro IPR003400; KEGG: bfs:BF3528 hypothetical protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Putative uncharacterized protein; IMG reference gene:2504105726; PFAM: Biopolymer transport protein ExbD/TolR; overlaps another CDS with the same product name.
 
 
 0.919
Bcop_0070
InterPro IPR003400; KEGG: bfs:BF3527 hypothetical protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Putative uncharacterized protein; IMG reference gene:2504105725; PFAM: Biopolymer transport protein ExbD/TolR; overlaps another CDS with the same product name.
 
 
 0.912
Bcop_0073
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: bth:BT_2055 putative biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Putative uncharacterized protein; IMG reference gene:2504105728; PFAM: MotA/TolQ/ExbB proton channel family.
 
 
 0.863
Bcop_0653
TonB-dependent receptor; InterPro IPR012910:IPR000531; KEGG: bvu:BVU_1852 hypothetical protein; PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; SPTR: Putative uncharacterized protein; IMG reference gene:2504106333; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
  
 
 0.830
Bcop_0150
COGs: COG0848 Biopolymer transport protein; InterPro IPR003400; KEGG: bfs:BF3738 putative tansport-like protein; PFAM: Biopolymer transport protein ExbD/TolR; SPTR: Putative biopolymer transport protein ExbD; IMG reference gene:2504105806; PFAM: Biopolymer transport protein ExbD/TolR.
  
 
 0.768
Bcop_0151
MotA/TolQ/ExbB proton channel; COGs: COG0811 Biopolymer transport protein; InterPro IPR002898; KEGG: bfs:BF3739 putative transport related membrane protein; PFAM: MotA/TolQ/ExbB proton channel; SPTR: Putative uncharacterized protein; IMG reference gene:2504105807; PFAM: MotA/TolQ/ExbB proton channel family.
  
 
 0.716
Bcop_0075
Polyprenyl synthetase; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: bth:BT_2058 putative isoprenyl synthetase; PFAM: Polyprenyl synthetase; SPTR: Putative uncharacterized protein; IMG reference gene:2504105731; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
       0.702
Bcop_2407
KEGG: bfs:BF0991 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108139.
  
    0.691
Bcop_0074
Hydrolase, TatD family; COGs: COG0084 Mg-dependent DNase; InterPro IPR015991:IPR001130; KEGG: pdi:BDI_3735 putative deoxyribonuclease; PFAM: Deoxyribonuclease, TatD-related; SPTR: Hydrolase, TatD family; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; IMG reference gene:2504105730; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family.
       0.679
Bcop_2402
KEGG: bth:BT_4373 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108134.
  
    0.667
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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