STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0097Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: pdi:BDI_3756 site-specific recombinase; PFAM: Integrase, catalytic core, phage; SPTR: Site-specific recombinase; IMG reference gene:2504105753; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (420 aa)    
Predicted Functional Partners:
Bcop_0096
DNA binding domain protein, excisionase family; InterPro IPR010093; KEGG: bfr:BF2790 putative excisionase; SPTR: Putative uncharacterized protein; TIGRFAM: Excisionase/Xis, DNA-binding; IMG reference gene:2504105752; TIGRFAM: DNA binding domain, excisionase family.
 
     0.813
Bcop_0098
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: pdi:BDI_3756 site-specific recombinase; PFAM: Integrase, catalytic core, phage; SPTR: Putative uncharacterized protein; IMG reference gene:2504105754; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
 
    
0.734
Bcop_1241
Protein of unknown function DUF1735; InterPro IPR013728; KEGG: pmz:HMPREF0659_A7009 hypothetical protein; PFAM: Domain of unknown function DUF1735; SPTR: Putative uncharacterized protein; IMG reference gene:2504106945; PFAM: Domain of unknown function (DUF1735).
  
     0.630
Bcop_0740
KEGG: bfs:BF0897 putative transmembrane protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106428.
  
     0.509
Bcop_1171
KEGG: bfs:BF1824 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106874.
  
     0.493
Bcop_2007
Histidine kinase; COGs: COG2205 Osmosensitive K+ channel histidine kinase; InterPro IPR019734:IPR003594; KEGG: bfs:BF2281 putative two component system sensor histidine kinase; PFAM: ATPase-like, ATP-binding domain; SMART: ATPase-like, ATP-binding domain; Tetratricopeptide repeat; SPTR: Putative uncharacterized protein; IMG reference gene:2504107726; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.470
Bcop_0095
Hypothetical protein; KEGG: afm:AFUA_4G14220 C6 finger domain protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105751.
       0.469
Bcop_0094
Integrase family protein; InterPro IPR002104; KEGG: bth:BT_3478 integrase; PFAM: Integrase, catalytic core, phage; SPTR: Putative uncharacterized protein; IMG reference gene:2504105750; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
   
 
 0.468
Bcop_0859
KEGG: bfr:BF3574 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106549; PFAM: Histone H1-like protein Hc1.
  
     0.463
Bcop_2011
KEGG: bfr:BF3032 putative cell surface protein; SPTR: Putative lipoprotein; IMG reference gene:2504107730.
  
     0.449
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.