STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0139Sporulation domain-containing protein; InterPro IPR007730; KEGG: bfs:BF3728 hypothetical protein; PFAM: Sporulation-related domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504105795; PFAM: Sporulation related domain. (155 aa)    
Predicted Functional Partners:
folE
COGs: COG0302 GTP cyclohydrolase I; HAMAP: GTP cyclohydrolase I; InterPro IPR001474:IPR020602; KEGG: bfs:BF3727 GTP cyclohydrolase I; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; PRIAM: GTP cyclohydrolase I; SPTR: GTP cyclohydrolase 1; TIGRFAM: GTP cyclohydrolase I; IMG reference gene:2504105794; PFAM: GTP cyclohydrolase I; TIGRFAM: GTP cyclohydrolase I.
  
    0.802
Bcop_0141
KEGG: bfr:BF3957 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105797; PFAM: DoxX.
 
     0.766
Bcop_2188
KEGG: bfs:BF1652 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107909.
  
     0.759
Bcop_2281
InterPro IPR011659; KEGG: bfs:BF1145 hypothetical protein; PFAM: WD40-like Beta Propeller; SPTR: Putative uncharacterized protein; IMG reference gene:2504108006.
  
     0.755
Bcop_0599
KEGG: bfs:BF0451 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106273.
  
     0.753
Bcop_0775
KEGG: bth:BT_4239 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106463; PFAM: Protein of unknown function (DUF3256).
  
     0.748
Bcop_0719
KEGG: bfs:BF1004 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106401.
  
     0.746
Bcop_0527
KEGG: bth:BT_3578 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106201; PFAM: Protein of unknown function (DUF3316).
  
     0.745
Bcop_0729
KEGG: bfs:BF3246 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106417; PFAM: DNA alkylation repair enzyme.
  
     0.745
Bcop_1405
KEGG: bfs:BF2370 putative lipoprotein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107114.
  
     0.740
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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