STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0199InterPro IPR000297; KEGG: bfs:BF3888 putative exported peptidyl-prolyl cis-trans isomerase; PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; SPTR: Putative uncharacterized protein; IMG reference gene:2504105858; PFAM: PPIC-type PPIASE domain. (462 aa)    
Predicted Functional Partners:
Bcop_0198
KEGG: bfs:BF3887 hypothetical protein; SPTR: Putative exported protein; IMG reference gene:2504105857.
 
  
 0.881
Bcop_0597
COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184:IPR016474; KEGG: bth:BT_3725 putative outer membrane protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Putative uncharacterized protein; TIGRFAM: Outer membrane assembly protein, YaeT; IMG reference gene:2504106271; PFAM: Surface antigen variable number repeat; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
  
 
 0.802
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
 
 0.800
Bcop_0197
KEGG: bth:BT_3850 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105856.
       0.797
mutL
DNA mismatch repair protein mutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
   
   0.769
Bcop_0200
Hypothetical protein; KEGG: bth:BT_3846 peptidyl-prolyl cis-trans isomerase; SPTR: Peptidyl-prolyl cis-trans isomerase; IMG reference gene:2504105859; PFAM: PPIC-type PPIASE domain.
       0.760
Bcop_0983
Outer membrane assembly lipoprotein YfiO; COGs: COG4105 DNA uptake lipoprotein; InterPro IPR017689; KEGG: bfs:BF2639 lipoprotein; SPTR: Putative uncharacterized protein; TIGRFAM: Outer membrane assembly lipoprotein YfiO; IMG reference gene:2504106684; TIGRFAM: outer membrane assembly lipoprotein YfiO.
  
  
 0.694
Bcop_2456
Hypothetical protein; COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: bfr:BF3817 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108189.
 
  
 0.637
Bcop_0377
KEGG: bfs:BF0158 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106039.
  
    0.628
Bcop_0329
KEGG: bth:BT_3247 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105990; PFAM: Protein of unknown function (DUF2723).
  
     0.627
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.