node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Bcop_0516 | rplC | Bcop_0516 | Bcop_0243 | COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: bfs:BF4017 50S ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0; SPTR: Putative 50S ribosomal protein L10; IMG reference gene:2504106188; PFAM: Ribosomal protein L10. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.999 |
Bcop_0516 | rplE | Bcop_0516 | Bcop_0231 | COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: bfs:BF4017 50S ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0; SPTR: Putative 50S ribosomal protein L10; IMG reference gene:2504106188; PFAM: Ribosomal protein L10. | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.996 |
Bcop_0516 | rplF | Bcop_0516 | Bcop_0228 | COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: bfs:BF4017 50S ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0; SPTR: Putative 50S ribosomal protein L10; IMG reference gene:2504106188; PFAM: Ribosomal protein L10. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.998 |
Bcop_0516 | rplM | Bcop_0516 | Bcop_0177 | COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: bfs:BF4017 50S ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0; SPTR: Putative 50S ribosomal protein L10; IMG reference gene:2504106188; PFAM: Ribosomal protein L10. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
Bcop_0516 | rplO | Bcop_0516 | Bcop_0224 | COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: bfs:BF4017 50S ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0; SPTR: Putative 50S ribosomal protein L10; IMG reference gene:2504106188; PFAM: Ribosomal protein L10. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
Bcop_0516 | rplP | Bcop_0516 | Bcop_0236 | COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: bfs:BF4017 50S ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0; SPTR: Putative 50S ribosomal protein L10; IMG reference gene:2504106188; PFAM: Ribosomal protein L10. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.998 |
Bcop_0516 | rplR | Bcop_0516 | Bcop_0227 | COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: bfs:BF4017 50S ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0; SPTR: Putative 50S ribosomal protein L10; IMG reference gene:2504106188; PFAM: Ribosomal protein L10. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
Bcop_0516 | rplV | Bcop_0516 | Bcop_0238 | COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: bfs:BF4017 50S ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0; SPTR: Putative 50S ribosomal protein L10; IMG reference gene:2504106188; PFAM: Ribosomal protein L10. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
Bcop_0516 | rplW | Bcop_0516 | Bcop_0241 | COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: bfs:BF4017 50S ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0; SPTR: Putative 50S ribosomal protein L10; IMG reference gene:2504106188; PFAM: Ribosomal protein L10. | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
Bcop_0516 | rpmD | Bcop_0516 | Bcop_0225 | COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: bfs:BF4017 50S ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0; SPTR: Putative 50S ribosomal protein L10; IMG reference gene:2504106188; PFAM: Ribosomal protein L10. | COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR005996:IPR016082; KEGG: bfs:BF3985 50S ribosomal protein L30; PFAM: Ribosomal protein L30, ferredoxin-like fold domain; SPTR: 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; IMG reference gene:2504105884; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle. | 0.999 |
rplC | Bcop_0516 | Bcop_0243 | Bcop_0516 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | COGs: COG0244 Ribosomal protein L10; InterPro IPR001790; KEGG: bfs:BF4017 50S ribosomal protein L10; PFAM: Ribosomal protein L10/acidic P0; SPTR: Putative 50S ribosomal protein L10; IMG reference gene:2504106188; PFAM: Ribosomal protein L10. | 0.999 |
rplC | rplE | Bcop_0243 | Bcop_0231 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. | 0.999 |
rplC | rplF | Bcop_0243 | Bcop_0228 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
rplC | rplM | Bcop_0243 | Bcop_0177 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
rplC | rplO | Bcop_0243 | Bcop_0224 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
rplC | rplP | Bcop_0243 | Bcop_0236 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.999 |
rplC | rplR | Bcop_0243 | Bcop_0227 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
rplC | rplV | Bcop_0243 | Bcop_0238 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.999 |
rplC | rplW | Bcop_0243 | Bcop_0241 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.999 |
rplC | rpmD | Bcop_0243 | Bcop_0225 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | COGs: COG1841 Ribosomal protein L30/L7E; InterPro IPR005996:IPR016082; KEGG: bfs:BF3985 50S ribosomal protein L30; PFAM: Ribosomal protein L30, ferredoxin-like fold domain; SPTR: 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; IMG reference gene:2504105884; PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle. | 0.999 |