STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0296InterPro IPR002931; KEGG: bfr:BF1133 hypothetical protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like; SPTR: Putative uncharacterized protein; IMG reference gene:2504105957; PFAM: Transglutaminase-like superfamily. (889 aa)    
Predicted Functional Partners:
Bcop_0297
Beta-N-acetylhexosaminidase; COGs: COG3525 N-acetyl-beta-hexosaminidase; InterPro IPR015882:IPR015883; KEGG: bth:BT_0460 beta-hexosaminidase precursor; PFAM: Glycoside hydrolase, family 20, catalytic core; Acetylhexosaminidase, subunit a/b; PRIAM: Beta-N-acetylhexosaminidase; SPTR: Beta-hexosaminidase; IMG reference gene:2504105958; PFAM: F5/8 type C domain; Glycosyl hydrolase family 20, catalytic domain; Glycosyl hydrolase family 20, domain 2.
       0.773
Bcop_0298
Alpha-1,2-mannosidase; COGs: COG3537 Putative alpha-1 2-mannosidase; InterPro IPR005887:IPR012939; KEGG: bth:BT_1032 hypothetical protein; PFAM: Glycosyl hydrolase 92; SPTR: Alpha-1,2-mannosidase family protein; TIGRFAM: Alpha-1,2-mannosidase, putative; IMG reference gene:2504105959; PFAM: Glycosyl hydrolase family 92; TIGRFAM: alpha-1,2-mannosidase, putative.
       0.693
Bcop_2235
KEGG: bfs:BF4040 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107956.
  
     0.635
Bcop_0299
Glycosidase related protein; COGs: COG2152 glycosylase; InterPro IPR007184; KEGG: bth:BT_1033 hypothetical protein; PFAM: Glycosidase, PH1107-related; SPTR: Putative uncharacterized protein; IMG reference gene:2504105960; PFAM: Domain of unknown function (DUF377).
       0.601
Bcop_1685
KEGG: bth:BT_3742 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107401.
  
     0.561
Bcop_0874
Peptidase C11 clostripain; InterPro IPR005077; KEGG: bfr:BF2740 clostripain-related protein; PFAM: Peptidase C11, clostripain; SPTR: Putative uncharacterized protein; IMG reference gene:2504106564; PFAM: Clostripain family.
  
     0.555
Bcop_0951
KEGG: bfs:BF2667 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106652.
  
     0.555
Bcop_0300
KEGG: bfs:BF1315 putative transmembrane protein; SPTR: Putative signal transducer; IMG reference gene:2504105961; PFAM: Major Facilitator Superfamily.
       0.554
Bcop_2119
KEGG: bth:BT_0084 conjugate transposon protein; SPTR: Conserved protein found in conjugate transposon; IMG reference gene:2504107840.
  
     0.538
Bcop_0678
Peptidase M28; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: bfs:BF0657 putative aminopeptidase; PFAM: Peptidase M28; SPTR: Putative uncharacterized protein; IMG reference gene:2504106358; PFAM: Peptidase family M28.
  
     0.527
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.