STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
Cooccurrence
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Experiments
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[Homology]
Score
Bcop_0318COGs: COG3467 flavin-nucleotide-binding protein; KEGG: bfs:BF4361 putative 5-nitroimadazole antibiotic resistance protein; SPTR: 5-nitroimidazole antibiotic resistance protein; IMG reference gene:2504105979; PFAM: Pyridoxamine 5'-phosphate oxidase. (177 aa)    
Predicted Functional Partners:
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.821
Bcop_0314
Phosphoesterase PA-phosphatase related protein; InterPro IPR000326; KEGG: bfs:BF4354 putative transmembrane protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SPTR: Putative uncharacterized protein; IMG reference gene:2504105975; PFAM: PAP2 superfamily.
       0.550
Bcop_0315
NAD-dependent epimerase/dehydratase; COGs: COG0451 Nucleoside-diphosphate-sugar epimerase; InterPro IPR001509; KEGG: bfs:BF4355 putative UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; SPTR: NAD-dependent epimerase; IMG reference gene:2504105976; PFAM: NAD dependent epimerase/dehydratase family.
       0.550
Bcop_1550
COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: bth:BT_0901 putative universal stress protein UspA; PFAM: UspA; SPTR: Universal stress protein; IMG reference gene:2504107265; PFAM: Universal stress protein family.
 
  
 0.504
Bcop_0437
Tetratricopeptide TPR_2 repeat-containing protein; COGs: COG1729 conserved hypothetical protein; InterPro IPR019734:IPR001440:IPR013105; KEGG: bfs:BF4215 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; SPTR: Putative TPR-repeat protein; IMG reference gene:2504106101.
  
     0.475
Bcop_0316
Cation diffusion facilitator family transporter; COGs: COG0053 Co/Zn/Cd cation transporter; InterPro IPR002524; KEGG: bfs:BF4356 putative transmembrane cation efflux protein; PFAM: Cation efflux protein; SPTR: Putative uncharacterized protein; TIGRFAM: Cation efflux protein; IMG reference gene:2504105977; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
       0.436
Bcop_0808
KEGG: bth:BT_0178 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106497; PFAM: Protein of unknown function (DUF1282).
  
     0.430
Bcop_0785
B3/4 domain protein; COGs: COG3382 conserved hypothetical protein; InterPro IPR005146; KEGG: bfs:BF1035 hypothetical protein; PFAM: B3/B4 tRNA-binding domain; SMART: B3/B4 tRNA-binding domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504106473; PFAM: B3/4 domain.
 
     0.418
Bcop_0149
TonB family protein; InterPro IPR006260; KEGG: bfs:BF3737 putative TonB exported protein; SPTR: Putative TonB exported protein; TIGRFAM: TonB, C-terminal; IMG reference gene:2504105805; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
  
    0.411
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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