STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0397KEGG: pgn:PGN_1678 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106060; PFAM: Protein of unknown function (DUF2795). (73 aa)    
Predicted Functional Partners:
Bcop_0276
KEGG: bfs:BF0244 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105937; PFAM: Protein of unknown function (DUF3109).
  
     0.769
Bcop_0936
InterPro IPR019734:IPR001440; KEGG: bth:BT_4254 hypothetical protein; PFAM: Tetratricopeptide TPR-1; SPTR: Putative uncharacterized protein; IMG reference gene:2504106637.
  
     0.754
Bcop_0396
ATP/cobalamin adenosyltransferase; COGs: COG2096 conserved hypothetical protein; InterPro IPR002779:IPR017858; KEGG: bfs:BF4082 putative vitamin B12 related cobalamin adenosyltransferase; PFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, EutT/PduO type; PRIAM: Cob(I)yrinic acid a,c-diamide adenosyltransferase; SPTR: ATP:cob(I)alamin adenosyltransferase; TIGRFAM: Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase, PduO-type, N-terminal; IMG reference gene:2504106059; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase.
       0.707
Bcop_0597
COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184:IPR016474; KEGG: bth:BT_3725 putative outer membrane protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Putative uncharacterized protein; TIGRFAM: Outer membrane assembly protein, YaeT; IMG reference gene:2504106271; PFAM: Surface antigen variable number repeat; TIGRFAM: outer membrane protein assembly complex, YaeT protein.
  
     0.705
Bcop_0329
KEGG: bth:BT_3247 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105990; PFAM: Protein of unknown function (DUF2723).
  
     0.695
Bcop_0697
KEGG: bth:BT_4000 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106378.
  
     0.672
Bcop_0395
KEGG: bfs:BF4083 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106058.
       0.646
Bcop_0016
Polynucleotide adenylyltransferase/metal dependent phosphohydrolase; COGs: COG0617 tRNA nucleotidyltransferase/poly(A) polymerase; InterPro IPR002646:IPR006674:IPR003607; KEGG: bfs:BF3442 putative polyA polymerase; PFAM: Poly A polymerase, head domain; Metal-dependent phosphohydrolase, HD subdomain; PRIAM: tRNA adenylyltransferase; SMART: Metal-dependent phosphohydrolase, HD domain; SPTR: Putative polyA polymerase; IMG reference gene:2504105671; PFAM: HD domain; Poly A polymerase head domain; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
     0.639
Bcop_2456
Hypothetical protein; COGs: COG1452 Organic solvent tolerance protein OstA; KEGG: bfr:BF3817 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504108189.
  
     0.622
Bcop_0398
KEGG: bth:BT_2753 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106061.
       0.618
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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