STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0469Endonuclease/exonuclease/phosphatase; InterPro IPR005135; KEGG: bfs:BF4223 hypothetical protein; PFAM: Endonuclease/exonuclease/phosphatase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106136; PFAM: Endonuclease/Exonuclease/phosphatase family. (363 aa)    
Predicted Functional Partners:
Bcop_0470
Peptidase S54, rhomboid domain protein; COGs: COG0705 membrane protein; InterPro IPR022764; KEGG: bfs:BF4222 putative transmembrane rhomboid family protein; PFAM: Peptidase S54, rhomboid domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504106137; PFAM: Rhomboid family; overlaps another CDS with the same product name.
       0.844
Bcop_0471
Peptidase S54, rhomboid domain protein; COGs: COG0705 membrane protein; InterPro IPR022764; KEGG: bfs:BF4221 putative transmembrane rhomboid family protein; PFAM: Peptidase S54, rhomboid domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504106138; PFAM: Rhomboid family; overlaps another CDS with the same product name.
       0.844
Bcop_0468
Peptidyl-dipeptidase Dcp; COGs: COG0339 Zn-dependent oligopeptidase; InterPro IPR001567; KEGG: bth:BT_2834 peptidyl-dipeptidase; PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; PRIAM: Peptidyl-dipeptidase Dcp; SPTR: Putative uncharacterized protein; IMG reference gene:2504106135; PFAM: Peptidase family M3.
       0.795
Bcop_0489
InterPro IPR000866; KEGG: bfs:BF4128 hypothetical protein; PFAM: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant; SPTR: Lipoprotein; IMG reference gene:2504106156; PFAM: AhpC/TSA family.
  
     0.731
Bcop_1231
Protein of unknown function DUF490; InterPro IPR007452; KEGG: bth:BT_0921 hypothetical protein; PFAM: Protein of unknown function DUF490; SPTR: Putative uncharacterized protein; IMG reference gene:2504106935; PFAM: Family of unknown function (DUF490).
  
     0.700
Bcop_0267
KEGG: bth:BT_3446 cell division protein FtsQ; SPTR: Putative uncharacterized protein; manually curated; IMG reference gene:2504105926.
  
     0.698
Bcop_0049
KEGG: bfs:BF3496 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504105704.
  
     0.686
Bcop_2192
KEGG: bth:BT_0316 putative hemin receptor; SPTR: Putative hemin receptor; IMG reference gene:2504107913; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.683
Bcop_2076
KEGG: bfs:BF2622 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504107796; PFAM: Protein of unknown function (DUF3078).
  
     0.675
Bcop_2168
Sporulation domain-containing protein; InterPro IPR007730; KEGG: bfs:BF1670 hypothetical protein; PFAM: Sporulation-related domain; SPTR: Putative uncharacterized protein; IMG reference gene:2504107889; PFAM: Sporulation related domain.
  
     0.673
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.