STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bcop_0484Peptidase M28; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: bfs:BF4141 hypothetical protein; PFAM: Peptidase M28; SPTR: Leucine aminopeptidase; IMG reference gene:2504106151; PFAM: Peptidase family M28. (335 aa)    
Predicted Functional Partners:
Bcop_0483
COGs: COG2166 SufE protein probably involved in Fe-S center assembly; InterPro IPR003808; KEGG: bfs:BF4142 putative SufE Fe/S-cluster-related protein; PFAM: Fe-S metabolism associated SufE; SPTR: Putative uncharacterized protein; IMG reference gene:2504106150; PFAM: Fe-S metabolism associated domain.
       0.821
Bcop_0485
Peptidase U61 LD-carboxypeptidase A; COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: bth:BT_2549 putative carboxypeptidase; PFAM: Peptidase S66, LD-carboxypeptidase A; SPTR: Putative muramoyltetrapeptide carboxypeptidase; manually curated; IMG reference gene:2504106152; PFAM: LD-carboxypeptidase.
       0.687
Bcop_1434
TonB family protein; InterPro IPR006260; KEGG: sli:Slin_4418 TonB family protein; SPTR: Putative TonB protein; TIGRFAM: TonB, C-terminal; IMG reference gene:2504107145; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
 
     0.656
Bcop_0391
KEGG: bfs:BF0013 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106053.
 
     0.655
Bcop_0252
Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR001440:IPR019734; KEGG: bth:BT_3462 TPR domain-containing protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Putative TPR domain protein; IMG reference gene:2504105911; PFAM: Tetratricopeptide repeat.
  
     0.585
Bcop_0967
KEGG: bfs:BF2636 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504106668.
  
    0.566
Bcop_0486
Phosphate butyryltransferase; COGs: COG0280 Phosphotransacetylase; InterPro IPR002505; KEGG: bth:BT_2551 phosphate butyryltransferase; PFAM: Phosphate acetyl/butaryl transferase; PRIAM: Phosphate butyryltransferase; SPTR: Putative uncharacterized protein; IMG reference gene:2504106153; PFAM: Phosphate acetyl/butaryl transferase.
       0.557
buk
COGs: COG3426 Butyrate kinase; HAMAP: butyrate kinase; InterPro IPR000890:IPR011245; KEGG: bth:BT_2552 butyrate kinase; PFAM: Acetate/butyrate kinase; PRIAM: Butyrate kinase; SPTR: Putative uncharacterized protein; TIGRFAM: Butyrate kinase; IMG reference gene:2504106154; PFAM: Acetokinase family; TIGRFAM: butyrate kinase; Belongs to the acetokinase family.
       0.557
Bcop_0168
Peptidase S8 and S53 subtilisin kexin sedolisin; COGs: COG1404 Subtilisin-like serine protease; InterPro IPR000209; KEGG: bth:BT_3889 subtilisin-like serine protease; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; SPTR: Putative uncharacterized protein; IMG reference gene:2504105824; PFAM: Subtilase family; Belongs to the peptidase S8 family.
  
  
 0.503
Bcop_2281
InterPro IPR011659; KEGG: bfs:BF1145 hypothetical protein; PFAM: WD40-like Beta Propeller; SPTR: Putative uncharacterized protein; IMG reference gene:2504108006.
  
     0.441
Your Current Organism:
Bacteroides coprosuis
NCBI taxonomy Id: 679937
Other names: B. coprosuis DSM 18011, Bacteroides coprosuis DSM 18011, Bacteroides coprosuis PC139, Bacteroides coprosuis str. DSM 18011, Bacteroides coprosuis strain DSM 18011
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